6N4L
Dithionite-reduced ADP-bound form of the nitrogenase Fe-protein from A. vinelandii
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.8856 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 45.587, 74.630, 75.398 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.040 - 1.130 |
R-factor | 0.1464 |
Rwork | 0.146 |
R-free | 0.15700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1g5p |
RMSD bond length | 0.007 |
RMSD bond angle | 1.466 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 53.041 | 39.011 | 1.190 |
High resolution limit [Å] | 1.130 | 3.570 | 1.130 |
Rmerge | 0.049 | 0.799 | |
Rmeas | 0.071 | 0.051 | 0.835 |
Rpim | 0.020 | 0.014 | 0.239 |
Total number of observations | 1246548 | 40611 | 167025 |
Number of reflections | 96897 | 3333 | 13986 |
<I/σ(I)> | 17.6 | 49.5 | 3 |
Completeness [%] | 100.0 | 99.9 | 99.9 |
Redundancy | 12.9 | 12.2 | 11.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 298 | 40% PEG 400, 0.17 mM Cymal 7, 0.1 M HEPES pH 7.5, 5 mM dithionite |