6MKD
4699 TCR bound to I-Ab Padi4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-10-10 |
Detector | RAYONIX MX225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 255.448, 73.643, 64.566 |
Unit cell angles | 90.00, 90.39, 90.00 |
Refinement procedure
Resolution | 29.242 - 3.200 |
R-factor | 0.2351 |
Rwork | 0.233 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4p23 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.152 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.6.0) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.390 | 3.420 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.136 | 0.695 |
Rmeas | 0.159 | 0.808 |
Rpim | 0.081 | 0.409 |
Total number of observations | 73637 | |
Number of reflections | 19627 | 3564 |
<I/σ(I)> | 6.7 | |
Completeness [%] | 98.3 | 98.9 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.994 | 0.887 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 14% PEG 4000, 100mM NaCacodylate, 100 mM NaCitrate |