6L4H
Crystal structure of human NDRG3 C30S mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-12-04 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97934 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 99.759, 99.759, 332.710 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.824 - 3.400 |
Rwork | 0.241 |
R-free | 0.27740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6l4b |
RMSD bond length | 0.003 |
RMSD bond angle | 1.246 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.460 |
High resolution limit [Å] | 3.400 | 9.210 | 3.400 |
Rmerge | 0.103 | 0.043 | 0.732 |
Rmeas | 0.111 | 0.045 | 0.787 |
Rpim | 0.039 | 0.015 | 0.275 |
Total number of observations | 177018 | ||
Number of reflections | 26798 | 1519 | 1311 |
<I/σ(I)> | 6.4 | ||
Completeness [%] | 97.7 | 98.4 | 97.5 |
Redundancy | 6.6 | 8.1 | 6.7 |
CC(1/2) | 0.998 | 0.826 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 200 mM sodium citrate tribasic dehydrate, 20% PEG 3350 |