6KHQ
bacterial cystathionine gamma-lyase MccB of Staphylococcus aureus with cofactor PLP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 5C (4A) |
Synchrotron site | PAL/PLS |
Beamline | 5C (4A) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-19 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.00003 |
Spacegroup name | P 42 21 2 |
Unit cell lengths | 132.281, 132.281, 97.954 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.200 - 2.300 |
R-factor | 0.2052 |
Rwork | 0.203 |
R-free | 0.24920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6kgz |
RMSD bond length | 0.002 |
RMSD bond angle | 0.491 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmeas | 0.072 | 0.373 |
Rpim | 0.017 | 0.126 |
Number of reflections | 39074 | 1914 |
<I/σ(I)> | 28.11 | 3.92 |
Completeness [%] | 99.5 | 98.7 |
Redundancy | 14.1 | 7.5 |
CC(1/2) | 1.000 | 0.701 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 288 | PEG 400, Sodium Acetate |