6H9Y
Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97907 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 38.988, 54.725, 67.433 |
Unit cell angles | 90.00, 97.92, 90.00 |
Refinement procedure
Resolution | 66.790 - 1.310 |
R-factor | 0.1821 |
Rwork | 0.181 |
R-free | 0.20900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6h9w |
RMSD bond length | 0.023 |
RMSD bond angle | 2.106 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 66.790 | 54.720 | 1.380 |
High resolution limit [Å] | 1.310 | 4.140 | 1.310 |
Rmerge | 0.087 | 0.055 | 0.600 |
Rmeas | 0.102 | 0.064 | 0.736 |
Rpim | 0.053 | 0.032 | 0.419 |
Number of reflections | 64030 | 2213 | 9582 |
<I/σ(I)> | 8.4 | ||
Completeness [%] | 94.9 | 99.8 | 97.6 |
Redundancy | 3.4 | 3.6 | 2.8 |
CC(1/2) | 0.995 | 0.993 | 0.739 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294.15 | 1.5M Li2SO4 0.1M Tris pH6.5 |