6E90
Ternary complex of human glycerol 3-phosphate dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-D |
Synchrotron site | APS |
Beamline | 23-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 1 |
Unit cell lengths | 58.940, 79.560, 85.060 |
Unit cell angles | 63.87, 86.60, 83.61 |
Refinement procedure
Resolution | 71.110 - 2.050 |
R-factor | 0.1793 |
Rwork | 0.177 |
R-free | 0.22610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6e8z 1x0x |
RMSD bond length | 0.012 |
RMSD bond angle | 1.158 |
Data reduction software | MOSFLM (7.2.1) |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((dev_2650)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 71.110 | 2.120 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.167 | 0.753 |
Rmeas | 0.199 | 0.916 |
Number of reflections | 80815 | 7975 |
<I/σ(I)> | 5.2 | |
Completeness [%] | 93.4 | 92.2 |
Redundancy | 3.2 | 3 |
CC(1/2) | 0.974 | 0.379 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 287 | 0.1 M calcium chloride, 5% MPD, 20% PEG 8000, 50 mM bis-Tris propane pH 7.0, 2 mM NAD, 1 mM dihydroxyacetone phosphate; 10 mg/mL |