6E8L
Crystal Structure of Alkyl hydroperoxidase D (AhpD) from Streptococcus pneumoniae (Strain D39/ NCTC 7466)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2018-07-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.953717 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.296, 84.233, 183.846 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.000 - 2.300 |
Rwork | 0.196 |
R-free | 0.24200 |
Data reduction software | MOSFLM |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.000 | 2.540 |
High resolution limit [Å] | 2.300 | 2.440 |
Rmerge | 0.096 | 0.472 |
Rmeas | 0.106 | 0.518 |
Rpim | 0.044 | 0.212 |
Number of reflections | 45900 | 4142 |
<I/σ(I)> | 10.5 | 3.2 |
Completeness [%] | 99.3 | 96 |
Redundancy | 5.7 | |
CC(1/2) | 0.998 | 0.859 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 281.15 | 0.1 M Bis-tris propane, 0.2 M Magnesium chloride hexahydrate, 25% w/v PEG 3350, 6% v/v 1,2-Propandiol |