5ZHC
Crystal structure of the PadR-family transcriptional regulator Rv3488 of Mycobacterium tuberculosis H37Rv
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2017-03-02 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 30.633, 49.099, 127.325 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.660 - 1.970 |
R-factor | 0.18766 |
Rwork | 0.185 |
R-free | 0.23773 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ejo |
RMSD bond length | 0.013 |
RMSD bond angle | 1.579 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 63.660 | 2.010 |
High resolution limit [Å] | 1.970 | 1.970 |
Rmerge | 0.075 | 0.650 |
Rmeas | 0.079 | 0.700 |
Rpim | 0.023 | 0.250 |
Number of reflections | 14217 | |
<I/σ(I)> | 34.06 | 2.06 |
Completeness [%] | 99.8 | 98.4 |
Redundancy | 10.9 | 6.8 |
CC(1/2) | 0.890 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 296 | 0.1 M sodium acetate, 2.0 M sodium formate |