5YGC
Crystal structure of Drosophila melanogaster Papi extended Tudor domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97776 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 77.808, 77.808, 144.014 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 27.578 - 2.000 |
R-factor | 0.1831 |
Rwork | 0.180 |
R-free | 0.21320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3fdr |
RMSD bond length | 0.009 |
RMSD bond angle | 1.341 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.100 | 0.330 |
Number of reflections | 18114 | |
<I/σ(I)> | 36.2 | 4 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 23.5 | 14.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 290 | 0.8 M Succinic acid pH 7.0 |