5XS3
Crystal structure of HLA Class I antigen
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 95 |
Detector technology | CCD |
Collection date | 2016-06-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 44.210, 81.100, 117.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 2.500 |
R-factor | 0.2202 |
Rwork | 0.214 |
R-free | 0.27240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qqd |
RMSD bond length | 0.005 |
RMSD bond angle | 0.789 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.084 | 0.196 |
Number of reflections | 13478 | |
<I/σ(I)> | 6.96 | 3.62 |
Completeness [%] | 89.0 | 92 |
Redundancy | 1.9 | 1.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277.15 | 1.2M Ammonium chloride, 0.1M MES pH 6.0, 20%(w/v) PEG 6000 |