5WO0
DNA polymerase beta substrate complex with incoming 5-FodUTP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-31 |
Detector | DECTRIS PILATUS3 R 200K-A |
Wavelength(s) | 1.54 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.728, 79.637, 55.289 |
Unit cell angles | 90.00, 107.28, 90.00 |
Refinement procedure
Resolution | 31.790 - 1.600 |
R-factor | 0.2012 |
Rwork | 0.200 |
R-free | 0.23050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fms |
RMSD bond length | 0.006 |
RMSD bond angle | 0.880 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.630 |
High resolution limit [Å] | 1.600 | 4.340 | 1.600 |
Rmerge | 0.065 | 0.052 | 0.740 |
Rmeas | 0.072 | 0.056 | 0.915 |
Rpim | 0.030 | 0.019 | 0.532 |
Total number of observations | 232652 | ||
Number of reflections | 55295 | 2847 | 2762 |
<I/σ(I)> | 16.8 | ||
Completeness [%] | 99.9 | 99.8 | 99.5 |
Redundancy | 4.2 | 8.4 | 2.8 |
CC(1/2) | 0.998 | 0.562 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 50 mM imidazole, pH 7.5, 16% PEG3350 and 350 mM sodium acetate |