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5WO0

DNA polymerase beta substrate complex with incoming 5-FodUTP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyPIXEL
Collection date2017-05-31
DetectorDECTRIS PILATUS3 R 200K-A
Wavelength(s)1.54
Spacegroup nameP 1 21 1
Unit cell lengths50.728, 79.637, 55.289
Unit cell angles90.00, 107.28, 90.00
Refinement procedure
Resolution31.790 - 1.600
R-factor0.2012
Rwork0.200
R-free0.23050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2fms
RMSD bond length0.006
RMSD bond angle0.880
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.630
High resolution limit [Å]1.6004.3401.600
Rmerge0.0650.0520.740
Rmeas0.0720.0560.915
Rpim0.0300.0190.532
Total number of observations232652
Number of reflections5529528472762
<I/σ(I)>16.8
Completeness [%]99.999.899.5
Redundancy4.28.42.8
CC(1/2)0.9980.562
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP29550 mM imidazole, pH 7.5, 16% PEG3350 and 350 mM sodium acetate

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