5VZ5
Crystal structure of an anaplastic lymphoma kinase-derived neuroblastoma tumor antigen bound to the Human Major Histocompatibility Complex Class I molecule HLA-B*1501
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 5.0.1 |
Synchrotron site | ALS |
Beamline | 5.0.1 |
Temperature [K] | 77 |
Detector technology | PIXEL |
Collection date | 2017-04-28 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 0.97741 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 112.890, 112.890, 177.380 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 97.766 - 2.590 |
R-factor | 0.2185 |
Rwork | 0.216 |
R-free | 0.26530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xr8 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.000 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 97.770 | 2.710 |
High resolution limit [Å] | 2.590 | 2.590 |
Rmerge | 0.100 | 1.350 |
Number of reflections | 21507 | 2547 |
<I/σ(I)> | 14.6 | 1.9 |
Completeness [%] | 100.0 | 100 |
Redundancy | 9.6 | 9.8 |
CC(1/2) | 0.998 | 0.778 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 295 | 0.1M Hepes (7.5) 2M Ammonium sulfate 2% PEG400 |