5VJP
Crystal Structure of Adenine Phosphoribosyltransferase from Saccharomyces cerevisiae Complexed with L-2,5-Dideoxy-2,5-Imino-Altritol 1,6-Bisphosphate (L-DIAB) and Adenine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-02-09 |
Detector | RAYONIX MX-225HE |
Wavelength(s) | 0.97931 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 138.087, 49.219, 95.354 |
Unit cell angles | 90.00, 130.55, 90.00 |
Refinement procedure
Resolution | 72.450 - 1.980 |
R-factor | 0.26295 |
Rwork | 0.262 |
R-free | 0.28079 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1g2q |
RMSD bond length | 0.007 |
RMSD bond angle | 1.247 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 72.450 | 2.030 |
High resolution limit [Å] | 1.980 | 1.980 |
Rmerge | 0.120 | |
Number of reflections | 33741 | 2392 |
<I/σ(I)> | 7.9 | 2 |
Completeness [%] | 98.7 | 99.9 |
Redundancy | 3.7 | 3.7 |
CC(1/2) | 1.000 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 100 mM sodium acetate, 0.2 M ammonium sulfate, 22% PEG4000 |