5U1X
Crystal structure of the ATP-gated P2X7 ion channel bound to allosteric antagonist JNJ47965567
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-10 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9774 |
Spacegroup name | I 21 3 |
Unit cell lengths | 169.327, 169.327, 169.327 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.880 - 3.201 |
R-factor | 0.2258 |
Rwork | 0.222 |
R-free | 0.26420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | A740003 bound P2X7 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.725 |
Data scaling software | Aimless (0.5.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.880 | 48.880 | 3.310 |
High resolution limit [Å] | 3.100 | 8.770 | 3.100 |
Rmerge | 0.134 | 0.102 | 1.206 |
Rmeas | 0.109 | 1.272 | |
Rpim | 0.036 | 0.398 | |
Total number of observations | 6545 | 26981 | |
Number of reflections | 14815 | ||
<I/σ(I)> | 12.1 | 24.9 | 2.2 |
Completeness [%] | 100.0 | 99.3 | 100 |
Redundancy | 10.1 | 9.4 | 10.1 |
CC(1/2) | 0.996 | 0.995 | 0.759 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 100 mM HEPES or Tris (pH 6.0-7.5), 100 mM NaCl, 4% ethylene glycol, 15% glycerol, 27-32% PEG-400 or 31-36% PEG-300, 0.1 mg/mL lipid mixture (60% POPE, 20% POPG, and 20% cholesterol), and 1 mM JNJ-47965567 |