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5U1X

Crystal structure of the ATP-gated P2X7 ion channel bound to allosteric antagonist JNJ47965567

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsCHESS BEAMLINE F1
Synchrotron siteCHESS
BeamlineF1
Temperature [K]100
Detector technologyPIXEL
Collection date2015-07-10
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9774
Spacegroup nameI 21 3
Unit cell lengths169.327, 169.327, 169.327
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.880 - 3.201
R-factor0.2258
Rwork0.222
R-free0.26420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)A740003 bound P2X7
RMSD bond length0.004
RMSD bond angle0.725
Data scaling softwareAimless (0.5.1)
Phasing softwarePHASER
Refinement softwarePHENIX (1.10_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.88048.8803.310
High resolution limit [Å]3.1008.7703.100
Rmerge0.1340.1021.206
Rmeas0.1091.272
Rpim0.0360.398
Total number of observations654526981
Number of reflections14815
<I/σ(I)>12.124.92.2
Completeness [%]100.099.3100
Redundancy10.19.410.1
CC(1/2)0.9960.9950.759
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277100 mM HEPES or Tris (pH 6.0-7.5), 100 mM NaCl, 4% ethylene glycol, 15% glycerol, 27-32% PEG-400 or 31-36% PEG-300, 0.1 mg/mL lipid mixture (60% POPE, 20% POPG, and 20% cholesterol), and 1 mM JNJ-47965567

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PDB entries from 2024-05-01

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