Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5TDJ

RNA decamer duplex with four 2'-5'-linkages

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.1
Synchrotron siteALS
Beamline8.2.1
Temperature [K]100
Detector technologyCCD
Collection date2015-08-25
DetectorADSC QUANTUM 315
Wavelength(s)1.000
Spacegroup nameC 1 2 1
Unit cell lengths27.538, 94.455, 21.283
Unit cell angles90.00, 111.19, 90.00
Refinement procedure
Resolution19.900 - 1.500
R-factor0.15385
Rwork0.152
R-free0.17033
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4ms9
RMSD bond length0.010
RMSD bond angle1.962
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0001.550
High resolution limit [Å]1.5001.500
Rmerge0.0640.554
Number of reflections7870
<I/σ(I)>18.31.8
Completeness [%]96.788.7
Redundancy3.93
CC(1/2)0.649
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP729310% MPD (2-methyl-2,4-pentanediol), 40 mM sodium cacodylate pH 7.0, 12 mM spermine tetrahydrochloride, 40mM LiCl, 20 mM MgCl2 and 80 mM SrCl2

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon