5QGJ
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of NUDT7 in complex with FMOPL000706a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 3 2 1 |
Unit cell lengths | 126.690, 126.690, 41.712 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 109.720 - 1.950 |
R-factor | 0.1873 |
Rwork | 0.186 |
R-free | 0.21440 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 5t3p |
RMSD bond length | 0.017 |
RMSD bond angle | 1.791 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.410 | 29.410 | 2.000 |
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.067 | 0.024 | 0.800 |
Rmeas | 0.071 | 0.025 | 0.845 |
Rpim | 0.022 | 0.008 | 0.267 |
Total number of observations | 283830 | 3313 | 19406 |
Number of reflections | 28163 | ||
<I/σ(I)> | 21.9 | 76.2 | 2.6 |
Completeness [%] | 99.7 | 97 | 96.5 |
Redundancy | 10.1 | 9.7 | 9.6 |
CC(1/2) | 0.999 | 1.000 | 0.860 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.1M bis-tris pH 5.5 -- 0.1M ammonium acetate -- 5%(w/v) PEG10K |