5OF0
X-ray structure of human glutamate carboxypeptidase II (GCPII), the E424M inactive mutant, in complex with a inhibitor CFBzOG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 101.467, 130.461, 159.574 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.250 - 1.480 |
R-factor | 0.15708 |
Rwork | 0.157 |
R-free | 0.17197 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bi1 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.691 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC (5.8.0135) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.250 | 1.500 |
High resolution limit [Å] | 1.480 | 1.480 |
Rmerge | 0.040 | 0.673 |
Rpim | 0.018 | 0.314 |
Number of reflections | 173724 | 8104 |
<I/σ(I)> | 17.6 | 1.9 |
Completeness [%] | 98.9 | 93.9 |
Redundancy | 5.2 | 5.2 |
CC(1/2) | 1.000 | 0.849 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 33% (v/v) pentaerythritol propoxylate PO/OH 5/4, 2 % (w/v) PEG 3350, and 100 mM Tris-HCl, pH 8.0 |