5OCP
The periplasmic binding protein component of the arabinose ABC transporter from Shewanella sp. ANA-3 bound to alpha and beta-L-arabinofuranose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 120 |
Detector technology | PIXEL |
Collection date | 2017-05-22 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.917, 86.327, 87.282 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.640 - 1.700 |
R-factor | 0.1687 |
Rwork | 0.167 |
R-free | 0.20430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2vk2 |
RMSD bond length | 0.020 |
RMSD bond angle | 2.034 |
Data scaling software | Aimless (0.5.32) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.640 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.082 | 0.597 |
Rmeas | 0.088 | 0.643 |
Rpim | 0.032 | 0.237 |
Number of reflections | 62122 | |
<I/σ(I)> | 3.77 | |
Completeness [%] | 100.0 | 99.9 |
Redundancy | 7.4 | 7.1 |
CC(1/2) | 0.998 | 0.903 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M Ammonium Nitrate, pH 6.2, 20 % PEG 3,350 |