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5O4H

HcgC from Methanococcus maripaludis cocrystallized with SAM and pyridinol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X10SA
Synchrotron siteSLS
BeamlineX10SA
Temperature [K]100
Detector technologyPIXEL
Collection date2016-09-11
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.99999
Spacegroup nameP 1 21 1
Unit cell lengths73.168, 77.736, 100.991
Unit cell angles90.00, 110.87, 90.00
Refinement procedure
Resolution47.850 - 1.750
R-factor0.1688
Rwork0.168
R-free0.19330
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5d4v
RMSD bond length0.010
RMSD bond angle1.210
Data reduction softwareXDS
Data scaling softwareSCALA (3.3.22)
Phasing softwareMOLREP (11.4.06)
Refinement softwareBUSTER (2.10.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.8501.840
High resolution limit [Å]1.7501.750
Rmerge0.0820.646
Rpim0.0410.331
Number of reflections10620315490
<I/σ(I)>9.72.2
Completeness [%]99.7100
Redundancy4.84.7
CC(1/2)0.9970.421
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4.52815 mg/ml of pure HcgC containing 2 mM SAM and 2 mM pyridinol was used and mixed at a ratio of 1 ul with 1 ul of precipitant composed of 50% v/v PEG 400, 100 mM NaAcetate pH 4.5 and 200 mM LiSO4

220113

PDB entries from 2024-05-22

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