5NW9
Crystal structure of the complex of Tdp1 with duplex DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-04-05 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 108.010, 195.310, 50.830 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 52.050 - 2.040 |
R-factor | 0.2338 |
Rwork | 0.232 |
R-free | 0.27090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | pdbid 1JY1 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.261 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0107) |
Data quality characteristics
Overall | |
Low resolution limit [Å] | 52.050 |
High resolution limit [Å] | 2.040 |
Number of reflections | 69045 |
<I/σ(I)> | 15.3 |
Completeness [%] | 99.2 |
Redundancy | 9.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 290 | 0.1M Ammonium sulphate, 0.1M HEPES, 25% w/v PEG 8000 |