5MHJ
ICP4 DNA-binding domain, lacking intrinsically disordered region, in complex with 12mer DNA duplex from its own promoter
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-23 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.92 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 127.254, 39.084, 90.443 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.220 - 2.117 |
R-factor | 0.1988 |
Rwork | 0.197 |
R-free | 0.23540 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | ICP4N-19mer complex |
RMSD bond length | 0.002 |
RMSD bond angle | 0.466 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.220 | 2.193 |
High resolution limit [Å] | 2.117 | 2.117 |
Rmerge | 0.116 | 0.771 |
Number of reflections | 25175 | |
<I/σ(I)> | 9.49 | 2.2 |
Completeness [%] | 94.8 | |
Redundancy | 6.4 | 6.6 |
CC(1/2) | 0.847 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 0.2 M Sodium acetate trihydrate, 0.1 M Sodium HEPES, pH 7.5, 25% w/v PEG 3350 [SG1 HT96 F2 Molecular Dimensions] cryoprotected with Perfluoropolyether Cryo Oil |