Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MHJ

ICP4 DNA-binding domain, lacking intrinsically disordered region, in complex with 12mer DNA duplex from its own promoter

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyPIXEL
Collection date2016-07-23
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.92
Spacegroup nameP 21 21 21
Unit cell lengths127.254, 39.084, 90.443
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.220 - 2.117
R-factor0.1988
Rwork0.197
R-free0.23540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)ICP4N-19mer complex
RMSD bond length0.002
RMSD bond angle0.466
Data reduction softwarexia2
Data scaling softwarexia2
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.11.1_2575: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.2202.193
High resolution limit [Å]2.1172.117
Rmerge0.1160.771
Number of reflections25175
<I/σ(I)>9.492.2
Completeness [%]94.8
Redundancy6.46.6
CC(1/2)0.847
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52770.2 M Sodium acetate trihydrate, 0.1 M Sodium HEPES, pH 7.5, 25% w/v PEG 3350 [SG1 HT96 F2 Molecular Dimensions] cryoprotected with Perfluoropolyether Cryo Oil

220113

PDB entries from 2024-05-22

PDB statisticsPDBj update infoContact PDBjnumon