5JE4
Crystal structure of Burkholderia glumae ToxA Y7A mutant with bound S-adenosylhomocysteine (SAH)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-10-21 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.515, 66.622, 145.056 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.100 - 1.932 |
R-factor | 0.1703 |
Rwork | 0.168 |
R-free | 0.22670 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | Burkholderia glumae ToxA Y7A mutant with bound SAH |
RMSD bond length | 0.006 |
RMSD bond angle | 0.794 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.10-2155-000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.100 | 2.000 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.099 | 0.495 |
Number of reflections | 32710 | |
<I/σ(I)> | 13.7 | 4.2 |
Completeness [%] | 94.5 | 97.5 |
Redundancy | 5.5 | 5.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 18 - 23% polyethylene glycol monomethyl ether 2000, 100 mM Tris, pH 6.1 - 6.8, 6 mM SAH, and 1 mM toxoflavin |