5JDY
Crystal structure of Burkholderia glumae ToxA Y7F mutant with bound S-adenosylhomocysteine (SAH) and toxoflavin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE A1 |
Synchrotron site | CHESS |
Beamline | A1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-11-20 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.97670 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.185, 71.170, 78.151 |
Unit cell angles | 90.00, 100.75, 90.00 |
Refinement procedure
Resolution | 19.764 - 1.770 |
R-factor | 0.15 |
Rwork | 0.148 |
R-free | 0.19400 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | Burkholderia glumae ToxA Y7F mutant with bound SAH |
RMSD bond length | 0.008 |
RMSD bond angle | 0.923 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((1.10-2155-000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.800 | 1.830 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.063 | 0.164 |
Number of reflections | 46227 | |
<I/σ(I)> | 14.4 | 4.7 |
Completeness [%] | 97.2 | 92.3 |
Redundancy | 2.8 | 2.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 18 - 23% polyethylene glycol monomethyl ether 2000, 100 mM Tris, pH 6.1 - 6.8, 6 mM SAH, and 1 mM toxoflavin |