5JDK
Crystal structure of the DNA binding domain of Sap1 in fission yeast S.pombe
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-05 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97915 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 36.840, 40.880, 70.140 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 17.870 - 0.998 |
R-factor | 0.1699 |
Rwork | 0.170 |
R-free | 0.17860 |
Structure solution method | SAD |
RMSD bond length | 0.006 |
RMSD bond angle | 0.911 |
Data reduction software | HKL-2000 (0.98.691) |
Data scaling software | CrystalClear (1.44) |
Phasing software | PHENIX (1.10.1) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 17.870 | 1.034 |
High resolution limit [Å] | 0.998 | 0.998 |
Rmerge | 0.049 | 0.598 |
Number of reflections | 58240 | |
<I/σ(I)> | 6.88 | 1.22 |
Completeness [%] | 99.9 | 98.6 |
Redundancy | 6.6 | 4.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.8 | 293 | 200mM Trimethylamine N-oxide, 15-22% (w/v) PEG 2000MME |
1 | VAPOR DIFFUSION, SITTING DROP | 8.8 | 293 | 200mM Trimethylamine N-oxide, 15-22% (w/v) PEG 2000MME |