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5IYP

Protruding domain of GII.4 human norovirus CHDC2094 in complex with HBGA type A (triglycan)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2015-07-27
DetectorADSC QUANTUM 315r
Wavelength(s)0.97625
Spacegroup nameI 2 2 2
Unit cell lengths89.710, 106.120, 135.920
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.248 - 1.270
R-factor0.1361
Rwork0.135
R-free0.15940
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5iyn
RMSD bond length0.008
RMSD bond angle1.246
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER (2.5.6)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.2501.280
High resolution limit [Å]1.2505.5901.250
Rmerge0.0570.0260.687
Number of reflections175960
<I/σ(I)>12.848.261.69
Completeness [%]98.898.197.1
Redundancy3.9
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.6291Sodium citrate, PEG3350

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