5HZA
Crystal structure of GII.10 P domain in complex with 3-fucosyllactose (3 FL)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-09-03 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 65.710, 78.170, 71.840 |
Unit cell angles | 90.00, 102.30, 90.00 |
Refinement procedure
Resolution | 49.610 - 1.350 |
R-factor | 0.1617 |
Rwork | 0.161 |
R-free | 0.17890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3onu |
RMSD bond length | 0.006 |
RMSD bond angle | 1.063 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.610 | 49.612 | 1.430 |
High resolution limit [Å] | 1.350 | 4.040 | 1.350 |
Rmerge | 0.050 | 0.029 | 0.344 |
Number of reflections | 142746 | ||
<I/σ(I)> | 9.84 | 24.11 | 2.23 |
Completeness [%] | 91.7 | 94.4 | 89.5 |
Redundancy | 2.3 | ||
CC(1/2) | 0.998 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | sodium nitrate, bis-tris propane, PEG3350 |