5EW2
Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT12
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-11-13 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.089, 41.296, 104.923 |
Unit cell angles | 90.00, 102.90, 90.00 |
Refinement procedure
Resolution | 50.000 - 3.590 |
R-factor | 0.2115 |
Rwork | 0.208 |
R-free | 0.26772 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.015 |
RMSD bond angle | 1.855 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.710 |
High resolution limit [Å] | 3.580 | 7.700 | 3.580 |
Rmerge | 0.120 | 0.026 | 0.466 |
Rmeas | 0.147 | 0.031 | 0.573 |
Rpim | 0.084 | 0.018 | 0.329 |
Total number of observations | 16010 | ||
Number of reflections | 5755 | ||
<I/σ(I)> | 5.9 | ||
Completeness [%] | 96.4 | 98.1 | 95.7 |
Redundancy | 2.8 | 2.8 | 2.6 |
CC(1/2) | 0.971 | 0.661 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 18% PEG 3350, 0.2 M Sodium Formate, 2% acetonitrile |