Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5EW2

Human thrombin sandwiched between two DNA aptamers: HD22 and HD1-deltaT12

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2013-11-13
DetectorRIGAKU SATURN 944
Wavelength(s)1.5418
Spacegroup nameC 1 2 1
Unit cell lengths117.089, 41.296, 104.923
Unit cell angles90.00, 102.90, 90.00
Refinement procedure
Resolution50.000 - 3.590
R-factor0.2115
Rwork0.208
R-free0.26772
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.015
RMSD bond angle1.855
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER (2.5.7)
Refinement softwareREFMAC (5.8.0135)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0003.710
High resolution limit [Å]3.5807.7003.580
Rmerge0.1200.0260.466
Rmeas0.1470.0310.573
Rpim0.0840.0180.329
Total number of observations16010
Number of reflections5755
<I/σ(I)>5.9
Completeness [%]96.498.195.7
Redundancy2.82.82.6
CC(1/2)0.9710.661
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29818% PEG 3350, 0.2 M Sodium Formate, 2% acetonitrile

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon