Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5ER0

Water-forming NADH oxidase from Lactobacillus brevis (LbNOX)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]100
Detector technologyCCD
Collection date2014-11-13
DetectorADSC QUANTUM 315
Wavelength(s)0.9999
Spacegroup nameP 1
Unit cell lengths67.968, 86.350, 93.327
Unit cell angles96.92, 94.07, 92.40
Refinement procedure
Resolution48.029 - 2.406
R-factor0.1745
Rwork0.172
R-free0.21530
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2cdu
RMSD bond length0.002
RMSD bond angle0.463
Data reduction softwareHKL-2000
Data scaling softwareSCALEPACK
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.440
High resolution limit [Å]2.4006.5102.400
Rmerge0.1120.0450.430
Rmeas0.1300.0520.505
Rpim0.0660.0260.264
Total number of observations310221
Number of reflections79832
<I/σ(I)>5.22.1
Completeness [%]98.699.896.6
Redundancy3.943.5
CC(1/2)0.9970.858
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION7.529110 mg/ml protein in 10 mM HEPES, pH 7.5, 100 mM NaCl mixed 1:1 (v/v) with well solution (30 % PEG 3350, 0.2 M NH4Cl).

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon