5ER0
Water-forming NADH oxidase from Lactobacillus brevis (LbNOX)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-13 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9999 |
Spacegroup name | P 1 |
Unit cell lengths | 67.968, 86.350, 93.327 |
Unit cell angles | 96.92, 94.07, 92.40 |
Refinement procedure
Resolution | 48.029 - 2.406 |
R-factor | 0.1745 |
Rwork | 0.172 |
R-free | 0.21530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2cdu |
RMSD bond length | 0.002 |
RMSD bond angle | 0.463 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.440 |
High resolution limit [Å] | 2.400 | 6.510 | 2.400 |
Rmerge | 0.112 | 0.045 | 0.430 |
Rmeas | 0.130 | 0.052 | 0.505 |
Rpim | 0.066 | 0.026 | 0.264 |
Total number of observations | 310221 | ||
Number of reflections | 79832 | ||
<I/σ(I)> | 5.2 | 2.1 | |
Completeness [%] | 98.6 | 99.8 | 96.6 |
Redundancy | 3.9 | 4 | 3.5 |
CC(1/2) | 0.997 | 0.858 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 291 | 10 mg/ml protein in 10 mM HEPES, pH 7.5, 100 mM NaCl mixed 1:1 (v/v) with well solution (30 % PEG 3350, 0.2 M NH4Cl). |