5EI4
First domain of human bromodomain BRD4 in complex with inhibitor 8-(5-Amino-1H-[1,2,4]triazol-3-ylsulfanylmethyl)-3-(4-chlorobenzyl)-7-ethyl-3,7-dihydropurine-2,6-dione
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2009-10-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.972390 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.353, 44.069, 78.272 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.140 - 1.050 |
R-factor | 0.17186 |
Rwork | 0.171 |
R-free | 0.19195 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oss |
RMSD bond length | 0.030 |
RMSD bond angle | 2.417 |
Data reduction software | XDS (Oct 15, 2015) |
Data scaling software | XDS (Oct 15, 2015) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.110 |
High resolution limit [Å] | 1.050 | 1.050 |
Rmerge | 0.074 | 0.481 |
Number of reflections | 60686 | |
<I/σ(I)> | 11.16 | 0.432 |
Completeness [%] | 99.5 | 98.6 |
Redundancy | 5.05 | 4.65 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 292 | Ratio 1:1 (protein:precipitant). 12 mg/mL BRD4_BD1 protein. 2.5 mM inhibitor (in DMSO) final concentration. Protein buffer: 0.01M HEPES (pH 7.5), 0.15M NaCl. Precipitant agent : 0.3M Na Formate, 0.1M NaCl, 22% PEG3350, 10% ethylene glycol. Cryoprotectant : 10% ethylene glycol. |