5EB2
Trp-bound YfiR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-09-26 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.9791 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 120.875, 120.875, 88.457 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.535 - 2.709 |
R-factor | 0.1965 |
Rwork | 0.195 |
R-free | 0.22990 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4yn7 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.048 |
Data reduction software | d*TREK |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.750 |
High resolution limit [Å] | 2.700 | 7.320 | 2.700 |
Rmerge | 0.117 | 0.071 | 0.584 |
Total number of observations | 527498 | ||
Number of reflections | 18400 | ||
<I/σ(I)> | 9.8 | ||
Completeness [%] | 99.9 | 98.8 | 100 |
Redundancy | 28.7 | 24.8 | 29.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 0.2 M NaCl, 0.1 M BIS-TRIS, 25%(w/v) polyethylene glycol 3350 |