5E7J
Crystal structure of the active catalytic core of the human DEAD-box protein DDX3 bound to AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-03 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.115869 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 51.350, 89.910, 107.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 69.007 - 2.230 |
R-factor | 0.2316 |
Rwork | 0.230 |
R-free | 0.26370 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.790 |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 69.007 | 2.290 | |
High resolution limit [Å] | 2.230 | 9.970 | 2.230 |
Rmerge | 0.068 | 0.016 | 0.483 |
Rmeas | 0.078 | 0.019 | 0.596 |
Total number of observations | 96049 | ||
Number of reflections | 24117 | 321 | 1174 |
<I/σ(I)> | 16.99 | 60.76 | 2.82 |
Completeness [%] | 96.4 | 97.6 | 64.8 |
Redundancy | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 291 | PEG 3000, sodium citrate |