5DJQ
The structure of CBB3 cytochrome oxidase.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-07-06 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9918 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 136.475, 279.933, 175.192 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.982 - 3.200 |
R-factor | 0.1888 |
Rwork | 0.187 |
R-free | 0.22280 |
RMSD bond length | 0.009 |
RMSD bond angle | 2.355 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHARP |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 14.982 | 3.300 |
High resolution limit [Å] | 3.200 | 3.200 |
Rmerge | 0.162 | 0.830 |
Number of reflections | 108344 | |
<I/σ(I)> | 11.4 | 2.4 |
Completeness [%] | 98.5 | 99.9 |
Redundancy | 3.5 | 3.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 294 | 20mM TRIS(HCL), 0.1 M NACL, 0.058% ALPHA-UDM, 0.0125% DECANOYLSUCROSE, 0.018% ALPHA-DDM, 0.016 M K3FE(CN)6, |