Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DAA

E177K MUTANT OF D-AMINO ACID AMINOTRANSFERASE COMPLEXED WITH PYRIDOXAMINE-5'-PHOSPHATE

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU RU200
Temperature [K]278
Detector technologyIMAGE PLATE
Collection date1998-01-12
DetectorRIGAKU RAXIS II
Spacegroup nameP 21 21 21
Unit cell lengths77.850, 91.870, 89.380
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.900
Rwork0.195
R-free0.24500
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1daa
RMSD bond length0.007
RMSD bond angle23.900

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareCNS (0.5)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]30.0003.200
High resolution limit [Å]2.9002.900
Rmerge0.1440.337
Total number of observations39415

*

Number of reflections13649

*

<I/σ(I)>9.94.9
Completeness [%]93.194.1
Redundancy2.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.3

*

PDA INACTIVATED PROTEIN WAS CONCENTRATED TO 30 MG/ML IN 0.1 M POTASSIUM PHOSPHATE BUFFER PH 7.6 CONTAINING 50 UM PLP AND 0.001 BETA-MERCAPTOETHANOL. CRYSTALS WERE THEN GROWN BY THE HANGING DROP METHOD IN 27% PEG 4000, 0.4 M SODIUM ACETATE, AND 0.1 M TRIS-CHLORIDE PH 8.5., vapor diffusion - hanging drop
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111K3PO4
211BETA-MERCAPTOETHANOL
311PEG 4000
411TRIS-CHLORIDE
511sodium acetate
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropenzyme30 (mg/ml)
21droppotassium phosphate50 (mM)
31drop0.13 (M)
41dropEDTA0.2 (mM)
51dropPLP0.05 (M)
61reservoirPEG335026 (%)
71reservoirsodium acetate0.3 (M)
81reservoirTris-HCl0.1 (M)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon