5CYU
Structure of the soluble domain of EccB1 from the Mycobacterium smegmatis ESX-1 secretion system.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-04-06 |
Detector | PSI PILATUS 6M |
Wavelength(s) | 0.9789 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 74.410, 74.410, 280.600 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.440 - 3.070 |
R-factor | 0.2464 |
Rwork | 0.241 |
R-free | 0.29740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4kk7 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.060 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | BUSTER-TNT |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.440 | 13.730 | 3.150 |
High resolution limit [Å] | 3.070 | 9.710 | 3.070 |
Rmerge | 0.103 | 0.039 | 2.223 |
Rmeas | 0.110 | 0.042 | 2.374 |
Total number of observations | 72652 | ||
Number of reflections | 8748 | 200 | 603 |
<I/σ(I)> | 13.67 | 35.56 | 1.01 |
Completeness [%] | 92.9 | 86.2 | 91.2 |
Redundancy | 8.3 | 8.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | Protein storage buffer: 20 mM Tris, pH 8.0, 300 mM NaCl, 10% glycerol Reservoir solution: 14% PEG 8000, 200 mM NaCl, 100 mM PO4-Citrate pH 4.2 Cryoprotectant: reservoir solution with 20% propylene glycol. |