5CQJ
Crystal structure of E. coli undecaprenyl pyrophosphate synthase in complex with clomiphene
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-11-28 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.978 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 63.312, 68.488, 111.630 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.507 - 2.150 |
R-factor | 0.1857 |
Rwork | 0.183 |
R-free | 0.24390 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.055 |
Data scaling software | xia2 (0.3.11) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 27.910 | 27.910 | 2.220 |
High resolution limit [Å] | 2.150 | 8.860 | 2.150 |
Rmerge | 0.083 | 0.016 | 0.452 |
Rpim | 0.052 | 0.011 | 0.380 |
Total number of observations | 84955 | 1320 | 3121 |
Number of reflections | 25369 | ||
<I/σ(I)> | 14.3 | 64 | 2 |
Completeness [%] | 94.0 | 95.2 | 66.3 |
Redundancy | 3.3 | 3.1 | 2.1 |
CC(1/2) | 0.997 | 1.000 | 0.678 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 100 mM MES pH 6.5, 0.16 M calcium acetate, 20 % PEG 8000, 20 % glycerol |