5C3T
PD-1 binding domain from human PD-L1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 193.15 |
Detector technology | PIXEL |
Collection date | 2015-06-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91842 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 53.004, 54.710, 84.907 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.450 - 1.800 |
R-factor | 0.1538 |
Rwork | 0.152 |
R-free | 0.17770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bis |
RMSD bond length | 0.023 |
RMSD bond angle | 2.223 |
Data reduction software | XDS (v2.0) |
Data scaling software | Aimless (0.2.8) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.450 | 42.450 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.065 | 0.024 | 0.391 |
Total number of observations | 76158 | 657 | 4675 |
Number of reflections | 11799 | ||
<I/σ(I)> | 20.7 | 56.2 | 4.9 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 6.45 | 5.6 | 6.7 |
CC(1/2) | 0.999 | 1.000 | 0.940 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295.15 | 1.84 Na Formate |