Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5C00

MdbA protein, a thiol-disulfide oxidoreductase from Corynebacterium diphtheriae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-ID
Synchrotron siteAPS
Beamline19-ID
Temperature [K]100
Detector technologyCCD
Collection date2013-10-30
DetectorADSC QUANTUM 315r
Wavelength(s)0.9792
Spacegroup nameP 1 21 1
Unit cell lengths61.532, 76.621, 72.586
Unit cell angles90.00, 90.17, 90.00
Refinement procedure
Resolution34.000 - 1.770
R-factor0.1642
Rwork0.162
R-free0.20980
Structure solution methodSAD
RMSD bond length0.013
RMSD bond angle1.503
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.800
High resolution limit [Å]1.7704.8001.770
Rmerge0.0780.0490.617
Rmeas0.0880.0550.713
Rpim0.0390.0250.351
Total number of observations318208
Number of reflections65737
<I/σ(I)>10.52.02
Completeness [%]99.99999.4
Redundancy4.84.74
CC(1/2)0.9970.752
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP82944.3 % w/v PEG 2000, 50 mM Tris pH 8.0, 28.6 % v/v PEG 550 MME, microseeding

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon