5C00
MdbA protein, a thiol-disulfide oxidoreductase from Corynebacterium diphtheriae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-10-30 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.532, 76.621, 72.586 |
Unit cell angles | 90.00, 90.17, 90.00 |
Refinement procedure
Resolution | 34.000 - 1.770 |
R-factor | 0.1642 |
Rwork | 0.162 |
R-free | 0.20980 |
Structure solution method | SAD |
RMSD bond length | 0.013 |
RMSD bond angle | 1.503 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.800 |
High resolution limit [Å] | 1.770 | 4.800 | 1.770 |
Rmerge | 0.078 | 0.049 | 0.617 |
Rmeas | 0.088 | 0.055 | 0.713 |
Rpim | 0.039 | 0.025 | 0.351 |
Total number of observations | 318208 | ||
Number of reflections | 65737 | ||
<I/σ(I)> | 10.5 | 2.02 | |
Completeness [%] | 99.9 | 99 | 99.4 |
Redundancy | 4.8 | 4.7 | 4 |
CC(1/2) | 0.997 | 0.752 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 294 | 4.3 % w/v PEG 2000, 50 mM Tris pH 8.0, 28.6 % v/v PEG 550 MME, microseeding |