4ZT3
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor N-(3,5-dichlorobenzyl)-N'-(5-fluoro-1H-imidazo[4,5-b]pyridin-2-yl)propane-1,3-diamine (Chem 1614)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-02-20 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.54 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 86.696, 106.054, 207.453 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.640 - 2.800 |
R-factor | 0.211 |
Rwork | 0.209 |
R-free | 0.24880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4eg8 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.092 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | PHASER (2.5.2) |
Refinement software | REFMAC (refmac_5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.640 | 38.640 | 2.900 |
High resolution limit [Å] | 2.800 | 10.840 | 2.800 |
Rmerge | 0.195 | 0.033 | 0.938 |
Rpim | 0.094 | 0.017 | 0.465 |
Total number of observations | 253141 | 4182 | 23139 |
Number of reflections | 47919 | ||
<I/σ(I)> | 9.8 | 38 | 1.8 |
Completeness [%] | 99.9 | 96.7 | 100 |
Redundancy | 5.3 | 4.6 | 5 |
CC(1/2) | 0.988 | 1.000 | 0.576 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 2.0-2.3 M ammonium sulfate, 0.2 M sodium chloride, 0.1 M sodium cacodylate |