Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YD9

Crystal structure of squid hemocyanin

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-5A
Synchrotron sitePhoton Factory
BeamlineBL-5A
Temperature [K]100
Detector technologyCCD
Collection date2014-11-16
DetectorADSC QUANTUM 315r
Wavelength(s)1
Spacegroup nameP 1 21 1
Unit cell lengths171.370, 538.660, 310.920
Unit cell angles90.00, 104.09, 90.00
Refinement procedure
Resolution49.099 - 3.000
R-factor0.2753
Rwork0.274
R-free0.30310
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3j32
RMSD bond length0.011
RMSD bond angle1.402
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 Overall
Low resolution limit [Å]49.100
High resolution limit [Å]3.000
Number of reflections1072359
<I/σ(I)>7.76
Completeness [%]98.9
Redundancy2.56
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293PEG400, HEPES, CaCl2

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon