4XVO
L,D-transpeptidase from Mycobacterium smegmatis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-16 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9792 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 92.390, 160.047, 209.912 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.281 - 2.600 |
R-factor | 0.1999 |
Rwork | 0.198 |
R-free | 0.23800 |
Structure solution method | SAD |
RMSD bond length | 0.003 |
RMSD bond angle | 0.725 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | HKL-3000 |
Refinement software | PHENIX ((phenix.refine: 1.8.2_1309)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.640 |
High resolution limit [Å] | 2.600 | 7.050 | 2.600 |
Rmerge | 0.104 | 0.052 | 0.969 |
Rmeas | 0.110 | 0.056 | |
Rpim | 0.043 | 0.022 | 0.424 |
Total number of observations | 307944 | ||
Number of reflections | 47865 | ||
<I/σ(I)> | 9 | 1.94 | |
Completeness [%] | 98.4 | 99.7 | 95.8 |
Redundancy | 6.4 | 6.3 | 5.7 |
CC(1/2) | 0.994 | 0.758 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 289 | 1M sodium/potassium phosphate buffer |