4IJZ
Crystal structure of diaminopimelate epimerase from Escherichia coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2009-04-30 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9795 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 89.380, 89.380, 179.618 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 43.370 - 2.000 |
R-factor | 0.1646 |
Rwork | 0.163 |
R-free | 0.20290 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.014 |
RMSD bond angle | 1.640 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.9) |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 179.618 | 44.690 | 2.110 |
High resolution limit [Å] | 2.000 | 6.320 | 2.000 |
Rmerge | 0.041 | 0.339 | |
Rmeas | 0.046 | 0.385 | |
Rpim | 0.020 | 0.178 | |
Total number of observations | 7233 | 29012 | |
Number of reflections | 47663 | ||
<I/σ(I)> | 13 | 28.7 | 4.2 |
Completeness [%] | 96.1 | 89.9 | 93.7 |
Redundancy | 4.5 | 4.7 | 4.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 293 | Sodium nitrate, PEG 3350, Bis-Tris propane, pH 8.5, vapor diffusion, hanging drop, temperature 293K |