4HV4
2.25 Angstrom resolution crystal structure of UDP-N-acetylmuramate--L-alanine ligase (murC) from Yersinia pestis CO92 in complex with AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-10-25 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97856 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.534, 78.021, 183.296 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.700 - 2.250 |
R-factor | 0.18184 |
Rwork | 0.179 |
R-free | 0.22437 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2f00 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.589 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.5.0102) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.290 |
High resolution limit [Å] | 2.250 | 2.250 |
Rmerge | 0.093 | 0.554 |
Number of reflections | 45997 | |
<I/σ(I)> | 17.8 | 3.68 |
Completeness [%] | 99.3 | 98.2 |
Redundancy | 6.9 | 6.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | Protein 7.4 mg/mL in 10 mM Tris-HCl pH8.3 0.5 M NaCl 5 mM BME, 1 mM ADP, 1 mM MgCl2 Crystallization: The PACT Suite (G7) - 0.2 M Sodium acetate 0.1 M Bis Tris propane pH 7.5 20% (w/v) PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K |