4HP7
Trioxacarcin D517 as a product of guanine robbery from d(AACCGGTT)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 24.086, 9.826, 35.093 |
Unit cell angles | 90.00, 92.32, 90.00 |
Refinement procedure
Resolution | 40.000 - 1.090 |
R-factor | 0.1532 |
R-free | 0.21560 |
RMSD bond length | 0.029 |
RMSD bond angle | 0.729 |
Data reduction software | XDS |
Data scaling software | XDS |
Refinement software | SHELXL (2012) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 1.110 |
High resolution limit [Å] | 1.090 | 1.090 |
Rmerge | 0.100 | 0.434 |
<I/σ(I)> | 6.28 | 1.36 |
Completeness [%] | 96.6 | 52.9 |
Redundancy | 3.14 | 1.21 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 310 | The solution in the reservoir contained tri-ammonium citrate (pH 7.0) and 30% v/v DMSO. The DNA-drug solution 2.5 mM DNA (single-strand concentration), 2.8mM trioxacarcin A D5, VAPOR DIFFUSION, HANGING DROP, temperature 310K |