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4HM3

Naphthalene 1,2-Dioxygenase bound to ethylbenzene

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 4.2.2
Synchrotron siteALS
Beamline4.2.2
Temperature [K]100
Detector technologyCCD
DetectorNOIR-1
Wavelength(s)1.04
Spacegroup nameH 3 2
Unit cell lengths139.940, 139.940, 208.253
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution15.945 - 1.500
R-factor0.1668
Rwork0.165
R-free0.20320
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.007
RMSD bond angle1.146
Data reduction softwared*TREK (9.2LDz)
Data scaling softwared*TREK
Phasing softwareAMoRE
Refinement softwarePHENIX (1.8_1069)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]15.99015.9901.550
High resolution limit [Å]1.5003.2201.500
Rmerge0.0970.0370.517
Total number of observations5467630033
Number of reflections124210
<I/σ(I)>7.824.41.8
Completeness [%]99.699.496.9
Redundancy3.954.212.51
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION5279.151.9-2.2 M AMMONIUM SULFATE, 4-6%, DIOXANE, 0.1 M MES, pH 5.0, VAPOR DIFFUSION, temperature 279.15K
1VAPOR DIFFUSION5279.151.9-2.2 M AMMONIUM SULFATE, 4-6%, DIOXANE, 0.1 M MES, pH 5.0, VAPOR DIFFUSION, temperature 279.15K

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PDB entries from 2024-06-12

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