Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3PEY

S. cerevisiae Dbp5 bound to RNA and ADP BeF3

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyCCD
Collection date2010-06-18
DetectorADSC QUANTUM 315r
Wavelength(s)1.116
Spacegroup nameP 21 21 21
Unit cell lengths42.136, 92.206, 104.524
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.467 - 1.401
R-factor0.1612
Rwork0.160
R-free0.17950
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.016
RMSD bond angle1.516
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwarePHASER
Refinement softwarePHENIX (1.6.4_486)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.450
High resolution limit [Å]1.4003.0201.400
Rmerge0.0400.0180.435
Number of reflections76028
<I/σ(I)>26.2
Completeness [%]94.099.567
Redundancy3.63.92.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.529120% PEG 3350, 200 mM MgNO3, 10 mM HEPES pH 7.5, 100 mM NaCl, 1mM DTT, 0.5 mM IP6, 5 mM MgCl2, 1 mM ADP, 3 mM BeCl2, 15 mM NaF, 5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 291K

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon