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2PJP

Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE BM30A
Synchrotron siteESRF
BeamlineBM30A
Temperature [K]100
Detector technologyCCD
Collection date2005-11-19
DetectorMAR CCD 165 mm
Wavelength(s)0.9797
Spacegroup nameC 1 2 1
Unit cell lengths103.498, 56.515, 48.414
Unit cell angles90.00, 95.60, 90.00
Refinement procedure
Resolution51.500 - 2.300
R-factor0.204
Rwork0.200
R-free0.25100
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1wsu
RMSD bond length0.021
RMSD bond angle2.463
Data reduction softwareMOSFLM
Data scaling softwareSCALA
Phasing softwarePHASER
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]51.50318.3302.110
High resolution limit [Å]2.0006.3202.000
Rmerge0.1010.0470.940
Total number of observations19316524
Number of reflections18032
<I/σ(I)>512.60.6
Completeness [%]95.792.492.8
Redundancy3.53.32.6
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.62986.7 mM calcium chloride, 33 mM sodium acetate ,10% 2-methyl-2,4-pentanediol, 0.17M sodium fluoride (final), pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111calcium chloride
211sodium acetate
3112-methyl-2,4-pentanediol
411sodium fluoride
512calcium chloride
612sodium acetate
7122-methyl-2,4-pentanediol
812sodium fluoride

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PDB entries from 2024-05-01

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