2PJP
Structure of the mRNA-binding domain of elongation factor SelB from E.coli in complex with SECIS RNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE BM30A |
Synchrotron site | ESRF |
Beamline | BM30A |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2005-11-19 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.9797 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 103.498, 56.515, 48.414 |
Unit cell angles | 90.00, 95.60, 90.00 |
Refinement procedure
Resolution | 51.500 - 2.300 |
R-factor | 0.204 |
Rwork | 0.200 |
R-free | 0.25100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1wsu |
RMSD bond length | 0.021 |
RMSD bond angle | 2.463 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 51.503 | 18.330 | 2.110 |
High resolution limit [Å] | 2.000 | 6.320 | 2.000 |
Rmerge | 0.101 | 0.047 | 0.940 |
Total number of observations | 1931 | 6524 | |
Number of reflections | 18032 | ||
<I/σ(I)> | 5 | 12.6 | 0.6 |
Completeness [%] | 95.7 | 92.4 | 92.8 |
Redundancy | 3.5 | 3.3 | 2.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 298 | 6.7 mM calcium chloride, 33 mM sodium acetate ,10% 2-methyl-2,4-pentanediol, 0.17M sodium fluoride (final), pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K |
Crystallization Reagents
ID | crystal ID | solution ID | reagent name | concentration | details |
1 | 1 | 1 | calcium chloride | ||
2 | 1 | 1 | sodium acetate | ||
3 | 1 | 1 | 2-methyl-2,4-pentanediol | ||
4 | 1 | 1 | sodium fluoride | ||
5 | 1 | 2 | calcium chloride | ||
6 | 1 | 2 | sodium acetate | ||
7 | 1 | 2 | 2-methyl-2,4-pentanediol | ||
8 | 1 | 2 | sodium fluoride |