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2O54

Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol at pH 7.0

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 5ID-B
Synchrotron siteAPS
Beamline5ID-B
Temperature [K]100
Detector technologyCCD
Collection date2003-01-15
DetectorMARMOSAIC 225 mm CCD
Wavelength(s)0.9756
Spacegroup nameP 43 21 2
Unit cell lengths101.830, 101.830, 452.380
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.103 - 2.500
R-factor0.225
Rwork0.222
R-free0.26900
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1d6m 1i7d
RMSD bond length0.010
RMSD bond angle1.274
Data reduction softwareXDS
Data scaling softwareSCALA
Phasing softwareAMoRE
Refinement softwareREFMAC (5.2.0019)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.1032.540
High resolution limit [Å]2.4792.480
Rmerge0.0720.262
Total number of observations12741
Number of reflections82671
<I/σ(I)>8.42.9
Completeness [%]96.875.9
Redundancy4.82.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72951.5 M (NH4)SO4, 0.1 M Sodium citrate, 0.5 M NaCl, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystallization Reagents
IDcrystal IDsolution IDreagent nameconcentrationdetails
111(NH4)SO4
211Sodium citrate
311NaCl
411HOH
512(NH4)SO4
612Sodium citrate
712NaCl
812HOH

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PDB entries from 2024-05-01

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