1YGP
PHOSPHORYLATED FORM OF YEAST GLYCOGEN PHOSPHORYLASE WITH PHOSPHATE BOUND IN THE ACTIVE SITE.
Experimental procedure
Detector technology | IMAGE PLATE |
Collection date | 1995-04-08 |
Detector | RIGAKU RAXIS |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 103.910, 143.930, 169.260 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 6.000 - 2.800 |
R-factor | 0.179 |
Rwork | 0.179 |
R-free | 0.23900 |
RMSD bond length | 0.018 |
RMSD bond angle | 2.870 |
Data reduction software | R-AXIS |
Phasing software | X-PLOR (3.1) |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
High resolution limit [Å] | 2.800 * | 2.800 * |
Rmerge | 0.105 | |
Total number of observations | 247322 * | |
Number of reflections | 50707 | |
Completeness [%] | 72.0 | |
Redundancy | 5 | 0.043 * |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 6 * | 18 * | used to seeding, Lin, K., (1997) Structure, 5, 1511. * |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | protein | 32 (mg/ml) | |
10 | 1 | reservoir | Bis-Tris | 100 (mM) | |
11 | 1 | reservoir | 50 (mM) | ||
12 | 1 | reservoir | Glc-1-P | 50 (mM) | |
13 | 1 | reservoir | ammonium sulfate | 400 (mM) | |
14 | 1 | reservoir | PEG4000 | 4.5 (%) | |
15 | 1 | drop | reservoir | equal volume of drop solution | |
2 | 1 | drop | sodium succinate | 130 (mM) | |
3 | 1 | drop | DTT | 2 (mM) | |
4 | 1 | drop | EDTA | 0.2 (mM) | |
5 | 1 | drop | leupeptin | 0.001 (mg/ml) | |
6 | 1 | drop | aprotonin | 0.001 (mg/ml) | |
7 | 1 | drop | pepstatin A | 0.001 (mg/ml) | |
8 | 1 | drop | PMSF | 0.5 (mM) | |
9 | 1 | drop | sodium azide | 0.02 (%) |