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1YFP

STRUCTURE OF YELLOW-EMISSION VARIANT OF GFP

Experimental procedure
Source typeROTATING ANODE
Source detailsRIGAKU RUH3R
Temperature [K]295
Detector technologyIMAGE PLATE
Collection date1997-12-05
DetectorRIGAKU
Spacegroup nameP 21 21 2
Unit cell lengths77.308, 117.655, 62.919
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution20.000 - 2.500
R-factor0.192

*

Rwork0.196
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1ema
RMSD bond length0.013
RMSD bond angle20.360

*

Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareTNT
Refinement softwareTNT
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]20.0002.560
High resolution limit [Å]2.5002.500
Rmerge0.080
Total number of observations53039

*

Number of reflections18916
<I/σ(I)>10.8
Completeness [%]92.094
Redundancy44
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.515

*

YFP WAS CONCENTRATED TO 10 MG/ML IN 50 MM HEPES PH 7.5. ROD-SHAPED CRYSTALS WITH APPROXIMATE DIMENSIONS OF 0.8 X 0.12 X 0.03 MM WERE GROWN IN HANGING DROPS CONTAINING 5 MICROLITERS PROTEIN AND 5 MICROLITERS MOTHER LIQUOR AT 15 DEGREES C AFTER 2 WEEKS. THE MOTHER LIQUOR CONTAINED 2.2 M SODIUM/POTASSIUM PHOSPHATE PH 6.9., vapor diffusion - hanging drop, temperature 288K
Crystallization Reagents in Literatures
IDcrystal IDsolutionreagent nameconcentration (unit)details
11dropprotein10 (mg/ml)
21dropHEPES50 (mM)
31reservoirsodium potassium phosphate2.2 (M)

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PDB entries from 2024-05-01

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