1VPN
UNASSEMBLED POLYOMAVIRUS VP1 PENTAMER
Experimental procedure
Source type | SYNCHROTRON |
Source details | CHESS BEAMLINE F1 |
Synchrotron site | CHESS |
Beamline | F1 |
Temperature [K] | 120 |
Detector technology | IMAGE PLATE |
Collection date | 1994-12 |
Detector | FUJI |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 221.500, 221.500, 99.800 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 20.000 - 2.000 |
R-factor | 0.176 |
Rwork | 0.176 |
R-free | 0.19900 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | POLYOMAVIRUS VP1 PENTAMER (PDB ENTRY 1SID) |
RMSD bond length | 0.008 |
RMSD bond angle | 1.360 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | X-PLOR (3.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.000 | 2.100 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.106 * | |
Number of reflections | 172107 | |
<I/σ(I)> | 14.9 | 2.1 |
Completeness [%] | 83.2 | 62.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | Vapor diffusion, hanging drop * | 8 | DROP: 1.0 M AMMONIUM PHOSPHATE PH 8.0 2.5 & ETHANOL 8-10 MG/ML PROTEIN RESERVOIR: 2.0 M AMMONIUM PHOSPHATE PH 8.0 5 % ETHANOL |
Crystallization Reagents in Literatures
ID | crystal ID | solution | reagent name | concentration (unit) | details |
1 | 1 | drop | ammonium phosphate | 1.0 (M) | |
2 | 1 | drop | ethanol | 2.5 (%) | |
3 | 1 | drop | protein | 8-10 (mg/ml) | |
4 | 1 | reservoir | ammonium phosphate | 2.0 (M) | |
5 | 1 | reservoir | ethanol | 5 (%) |